Research Article | Open Access
Volume 2024 |Article ID 0203 | https://doi.org/10.34133/plantphenomics.0203

Visualization and Quantitative Evaluation of Functional Structures of Soybean Root Nodules via Synchrotron X-ray Imaging

Alireza Nakhforoosh,1 Emil Hallin,1 Chithra Karunakaran,2 Malgorzata Korbas,2 Jarvis Stobbs,2 and Leon Kochian 1

1Global Institute for Food Security, Saskatoon, SK S7N 4L8, Canada
2Canadian Light Source Inc., Saskatoon, SK S7N 2V3, Canada

Received 
19 Dec 2023
Accepted 
26 May 2024
Published
17 Jul 2024

Abstract

The efficiency of N2-fixation in legume–rhizobia symbiosis is a function of root nodule activity. Nodules consist of 2 functionally important tissues: (a) a central infected zone (CIZ), colonized by rhizobia bacteria, which serves as the site of N2-fixation, and (b) vascular bundles (VBs), serving as conduits for the transport of water, nutrients, and fixed nitrogen compounds between the nodules and plant. A quantitative evaluation of these tissues is essential to unravel their functional importance in N2-fixation. Employing synchrotron-based x-ray microcomputed tomography (SR-μCT) at submicron resolutions, we obtained high-quality tomograms of fresh soybean root nodules in a non-invasive manner. A semi-automated segmentation algorithm was employed to generate 3-dimensional (3D) models of the internal root nodule structure of the CIZ and VBs, and their volumes were quantified based on the reconstructed 3D structures. Furthermore, synchrotron x-ray fluorescence imaging revealed a distinctive localization of Fe within CIZ tissue and Zn within VBs, allowing for their visualization in 2 dimensions. This study represents a pioneer application of the SR-μCT technique for volumetric quantification of CIZ and VB tissues in fresh, intact soybean root nodules. The proposed methods enable the exploitation of root nodule’s anatomical features as novel traits in breeding, aiming to enhance N2-fixation through improved root nodule activity.

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